Is it possible to merge reports from different runs?

[m-ocejo]

Is it possible to merge two separate reports into a single one? We have around 70 samples in total and had to run the analyses in two batches, presumably because of computing requierements.

Thanks!

[jllavin77]

I'd love to see how to work this out also. The instructions given in the readme are not very self explicative and the tormes_report.sh file spits an error in line 52, when I try to run it alone...

Best

JL

[nmquijada]

Hi all,
Deffinitively you can! Althouh it might require some programming expertise.
I will work in a "user-friendly" solution, probably by including a new script in the next software release and further documentation.

@m-ocejo : Assembly and pangenome analysis are the most computing intensive steps in TORMES analysis. TORMES is deviced to adjust the computing requirements to your computer's strength. Assembly will not be a problem and you can skip pangenome analysis by the --no-pangenome option (if it crashes...). I encourage you to try. However, repeating an entire genome analysis just for getting a unique report is not an appropiate option!

@jllavin77 : the tormes-report script is mainly deviced for the tormes script and it is not that user-friendly... I will work in the solutions described above.

Thanks for your suggestions!