[v23.3.x] cst/ducktape: Accept errors due to gap in manifest

[vbotbuildovich]

Backport #18472 to branch v23.3.x. Note that this issue was created as a placeholder, since the original PR's commit(s) could not be automatically cherry-picked.
Here are the commands to execute:

git checkout v23.3.x
git checkout -b vbotbuildovich/backport-18472-v23.3.x-373
git cherry-pick -x 7a9e604111005d3085ac9bfaa91728745021373e

git push origin vbotbuildovich/backport-18472-v23.3.x-373
gh pr create \
  --title "[v23.3.x] cst/ducktape: Accept errors due to gap in manifest" \
  --base "v23.3.x" \
  --label "kind/backport" \
  --head "vbotbuildovich/backport-18472-v23.3.x-373" \
  --draft \
  --repo "redpanda-data/redpanda" \
  --milestone "v23.3.x-next" \
  --body "Backport of PR https://github.com/redpanda-data/redpanda/pull/18472 "

JIRA Link: [CORE-3005](https://redpandadata.atlassian.net/browse/CORE-3005)