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Hello, I trained as a biochemist at Princeton University, but have since become interested in computational methods for simulating the time evolution of biomolecular networks. I developed the method of Agent-based Kinetics (ABK) for probing the effects of heterogeneity in the composition of species populations on the dynamics of a system.

I have done this work in my spare time over the last few years, a true labor of love. Any contributions would allow me to spend more time and energy on the continued development and support of this open-source project!

For more information on the project, see the featured repositories:

  • ABK: contains the Matlab code I used when prototyping the ABK algorithm.
  • AbStochKin: a general implementation of the ABK algorithm in Python.

Featured work

  1. alexplaka/ABK

    Agent-based Kinetics monograph and associated Matlab code.

    MATLAB
  2. alexplaka/AbStochKin

    Agent-based Stochastic Kinetics

    Python

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