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Jun 1, 2021
bacterial-genome-analysis
Here are 42 public repositories matching this topic...
Script to design core genome phylogeny using bacterial genome assemblies
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Jul 1, 2021 - Shell
ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
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Aug 16, 2021 - Jupyter Notebook
Reproducible and comprehensive sequence analyses for single-species bacterial dataset
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Oct 12, 2021 - Tcl
DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
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Feb 22, 2022 - Python
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
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Apr 25, 2022 - Python
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
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Apr 26, 2022 - R
Pipeline for de novo assembly of bacterial genomes from paired-end Illumina reads
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May 11, 2022 - Python
Python scripts that predict and plot the location of the origin of replication (oriC) of circular bacterial genomes based on Z-curve analysis, GC-skew analysis. and certain gene locations
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Jul 10, 2022 - Python
Bioinformatics
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Nov 1, 2022 - Python
Making whole bacterial genome sequencing data analysis easy
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Mar 13, 2023 - Shell
Food wastE biopEptiDe claSsifier: from microbial genome to biopeptides function
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Oct 9, 2023 - Python
Various scripts I used during my tenure as a Postdoctoral Associate at Cornell University
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Nov 24, 2023 - HTML
A Bash script that automates the search in bacterial genomes for LuxR and LuxI -like proteins. These are important components for Quorum Sensing in bacteria
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Dec 3, 2023 - Shell
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
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Jan 25, 2024 - Nextflow
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
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Feb 9, 2024 - Python
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
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Mar 4, 2024 - Jupyter Notebook
Medium scale identification of genomic neighbors in bacterial genomes
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May 17, 2024 - Python
Bacterial plasmid annotation pipeline
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Mar 21, 2024 - Python
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