cell-cycle
Here are 20 public repositories matching this topic...
ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast | T.D.G.A. Mondeel, P. Holland, J. Nielsen and M. Barberis | 2019 | https://doi.org/10.1093/nar/gkz603
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Mar 8, 2022 - HTML
Modeling the START transition in the budding yeast cell cycle
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Mar 6, 2024
Imoto, H. & Okada, M. Signal-dependent regulation of early-response genes and cell cycle: a quantitative view. Curr. Opin. Syst. Biol. 15, 100–108 (2019).
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Aug 25, 2020 - Julia
Bachelor thesis project : Simulation of the WNT protein's interations with the circadian clock-cell cycle system
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May 15, 2021 - MATLAB
Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs | Thierry D.G.A. Mondeel, Oleksandr Ivanov, Hans V. Westerhoff, Wolfram Liebermeister and Matteo Barberis | NPJ Syst. Biol. Appl. (2020) | https://doi.org/10.1038/s41540-020-0125-0
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Nov 14, 2020 - Jupyter Notebook
An interactive web application for exploring cell cycle models
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Oct 31, 2023 - Python
PyTorch + images of human T lymphocyte cells (Jurkat cells)
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Apr 10, 2021 - Jupyter Notebook
Semester course project- Computational Systems Biology (BT5240)
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Aug 18, 2020 - MATLAB
RB represses cohesin-dependent loop formation and safeguards E2F-independent transcription
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Apr 3, 2024 - Jupyter Notebook
This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.
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May 2, 2023 - Jupyter Notebook
Interactive cell cycle analysis
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Oct 12, 2021 - R
Track single-cells and profile the cell cycle with PCNA images.
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Jun 9, 2022 - Python
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Sep 26, 2022 - R
What's all this talk about cell cycle models?
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Oct 17, 2023 - Python
Single-cell transcriptome analysis by fluorescence labeling
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Jan 10, 2023 - HTML
Track single cells and profile the cell cycle with PCNA fluorescence images
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Sep 1, 2023 - Python
Predict cell cycle phase in a continuum from single-cell RNA-seq data
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Nov 14, 2020 - R
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
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Jul 7, 2022 - Python
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Mar 27, 2024
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