Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
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Updated
May 21, 2021 - Jupyter Notebook
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
A tool for Nanopore Amplicon Real-Time (NART) analysis.
VIral GEnome ASsembly pipelines for WGS
Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.
Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
#NoJobTooSmall Contract / ForHire job shop for laboratory tool building / developmental work in the nanoscale realm as well as nanofabrication mfg engineering
Code for STORK. Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care. “Copyright © 2022 The Trustees of Columbia University in the City of New York. All Rights Reserved.”
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling
How to set up and run the Miniasm assembler.
Official implementation of paper "Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Nanopore Readouts" (Nano Letters)
NanoSwe: Analysing nanopore (PromethION) data of Swedish genomes
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater
Identify and characterize repeat expansions in long read data
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
Nanopore sequencing experimental protocols and computational pipelines
Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline
NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data
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