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Oct 4, 2021 - Jupyter Notebook
pathway-analysis
Here are 93 public repositories matching this topic...
A wrapper around Bio2BEL HGNC for ComPath
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Jun 7, 2018 - Python
Investigating the use of hierarchical modelling for pathway analyses
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Dec 14, 2018 - R
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
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Nov 8, 2021 - Python
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May 15, 2018 - Python
This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock
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Aug 27, 2020 - R
Implementing the Linkage and Pathway Universal Tests using the clrdag package for Direceted Acyclic Graphs. Testing the two tests on cytometry data to analyze the links.
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Dec 10, 2022 - HTML
Survival based clustering of gene expression data for disease subtyping
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Apr 1, 2023 - R
Neuronal genes mutation interactions and analysis
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Aug 17, 2021 - Jupyter Notebook
An example on how to use reactome Rest API
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Dec 4, 2017 - Jupyter Notebook
Snakemake pipeline to benchmark 11 functional pathway annotation systems
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Jun 30, 2022 - Python
Colorectal cancer CMSs subtyping and personalized medication recommendation based on RNA seq pathway analysis
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Jun 8, 2022 - Jupyter Notebook
This repository hosts the java implementation of MITHrIL and SPECIFIC
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Dec 7, 2020 - Java
An R package for multi-dimensional pathway enrichment analysis (legacy repo)
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Oct 6, 2019 - R
Analyze and compare different pathway resources
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Jul 17, 2018 - R
A repository containing abstract classes that Bio2BEL repos should extend to be adapted to the Compath environment
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Mar 16, 2020
Training materials related to pathways data analysis
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Sep 11, 2019
Survival Analysis through the integration of expression data, phenotype data, and clinical data
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Oct 26, 2022 - R
GSApp Pathway Analysis
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Jun 19, 2023 - HTML
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