One-stop shop for one-click NGS analyses from the command-line
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Updated
Oct 12, 2017 - Shell
One-stop shop for one-click NGS analyses from the command-line
R package for Bayesian deconvolution of bulk RNAseq data
Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc
Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University
Crosslinking-based RNA Interactomes and Structuromes
Scripts and code I wrote for RNA-Seq data aalysis
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
Basic script for RNA-seq analysis with DESeq2
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
non-Coding RNA Deep Learning Classifier
A python package storing different tools for different NGS operations
Comparing hierarchical models to existing methods on simulated and recount data
kallisto task for RNA-seq workflow
My master thesis is hosted here !
To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.
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