Computations required for https://doi.org/10.1103/PhysRevE.97.020402 and additional work
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Updated
Dec 11, 2018 - Mathematica
Computations required for https://doi.org/10.1103/PhysRevE.97.020402 and additional work
Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets
Structure learning for protein signaling pathways
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
(DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction
An integrative dynamic model of brain energy metabolism (Coultier et al 2009)
The functional analysis of genes provides relevant information to understand cellular function. Further, the mapping of genetic interactions sheds light on how genes act in the emergence of cellular complexity. Here, we present the most extensive genetic interaction and morphological profiling screen in a metazoan cell to date. We profiled 680 0…
Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment
Code repository for the publication. Contains MATLAB codes and sequence data used for evolutionary analysis.
A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity (Nakano et al. 2010)
Finding paths of interest in networks
Rescue of plasticity by a computationally predicted protocol (Liu et al. 2013)
Computational modeling of gephyrin-dependent inhibitory transsynaptic signaling (Lupascu et al 2020)
Converting SBGN encoded pathways to the SIF file format
Converting KGML encoded KEGG pathways to the SIF file format
Model of a BDNF feedback loop (Zhang et al 2016)
Modeling signaling networks in cancer
PHOsphoproteomic dissecTiOn using Networks
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