single-cell
Here are 784 public repositories matching this topic...
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
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Sep 2, 2016
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
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Jan 17, 2017 - Python
Inference of switch-like differential expression along single-cell trajectories
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Jan 20, 2017 - R
Code and manuscript files for Aaron and Karsten's deconvolution paper.
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Feb 2, 2017 - TeX
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
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Feb 15, 2017 - R
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
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Feb 15, 2017 - R
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
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Feb 15, 2017 - R
Cataloging papers on cell state - Data, experiments, methods, and theory
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Feb 21, 2017
An R package for low-level analysis of single-cell RNA-seq data. See https://bioconductor.org/packages/release/bioc/html/scran.html for the release version, or https://bioconductor.org/packages/devel/bioc/html/scran.html for the official development version.
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Feb 21, 2017 - R
Non-official Git repository for R package cellrangerRkit (currently not available elsewhere)
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Feb 22, 2017 - R
Code and manuscript files for Aaron's plate effect paper.
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Feb 22, 2017 - PostScript
A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.
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Feb 28, 2017 - Shell
Tools for processing UMI RNA-tag data | Power analysis of single-cell RNA-sequencing experiments ------------------
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Mar 2, 2017 - Python
Files for a Bioconductor workflow for low-level scRNA-seq data analyses.
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Mar 2, 2017 - TeX
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Mar 10, 2017 - R
An R package for basic indrop analyses and data handling
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May 25, 2017 - R
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