Various utility functions for Seurat single-cell analysis
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Updated
Jun 9, 2024 - R
Various utility functions for Seurat single-cell analysis
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
marker-based purification of cell types from single-cell RNA-seq datasets
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
Spatial-Linked Alignment Tool
Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data
Single-cell Pediatric Cancer Atlas Portal is a growing database of uniformly processed single-cell data from pediatric cancer tumors and model systems
Assembler for multiple RNA-seq samples
an interactive explorer for flow cytometry data
Table of software for the analysis of single-cell RNA-seq data.
Spatial dissimilarity analysis in single cells
Self-Supervised Vision Transformers for multiplexed imaging datasets
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
Label elements within user drawn gates
Perturbation Analysis in the scverse ecosystem.
Multi-omic single-cell optimal transport tools
A tool for semi-automatic cell type classification
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