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Protein Residue Contact Prediction based on a Deep Neural Architecture

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AntoinePassemiers/Wynona

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Wynona: a Fully-Convolutional Neural Architecture for Protein Contact Prediction

User installation

Install package from the root of the repository:

make

or from the src/ folder:

cd src
python setup.py install

Dependencies

  • NumPy (>= 1.15.4)
  • Scipy (>= 1.1.0)
  • matplotlib (>= 3.0.2)
  • pandas (>= 0.23.4)
  • Cython (>= 0.29.2)
  • PyTorch (>= 1.0.0)

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Protein Residue Contact Prediction based on a Deep Neural Architecture

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