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@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

Pinned

  1. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 2 1

  2. illumina-uploader illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 2 1

  3. mpxv-artic-nf mpxv-artic-nf Public

    Python 1

  4. covid-qc covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 3

Repositories

Showing 10 of 114 repositories
  • fluviewer-nf Public

    Nextflow pipeline for influenza A whole genome sequence analysis

    Nextflow 0 0 4 1 Updated Jun 6, 2024
  • genomics-services-monitor Public

    Tool for Monitoring Genomics Services

    Python 0 0 2 0 Updated Jun 6, 2024
  • WasteFlow Public

    Nextflow pipeline for pathogen surveillance in wastewater

    Nextflow 4 GPL-3.0 0 0 0 Updated Jun 5, 2024
  • auto-hcv Public

    Automated genomic analysis of HCV sequence data

    Python 0 MIT 1 1 0 Updated Jun 4, 2024
  • alignment-variants Public

    Pipeline to perform alignment & variant calling on whole-genome sequence data

    Nextflow 0 0 1 0 Updated Jun 1, 2024
  • auto-tb-amr-amplicon Public
    Python 0 0 0 0 Updated May 30, 2024
  • routine-assembly Public

    Pipeline for performing routine genome assembly

    Nextflow 1 0 1 0 Updated May 27, 2024
  • noro-meta-nf Public

    Nextflow pipeline for classification and quantification of metagenomic samples.

    Python 0 0 0 0 Updated May 27, 2024
  • mpxv-qc Public

    Companion pipeline to perform quality control for BCCDC-PHL/mpxv-artic-nf

    Python 1 0 1 0 Updated May 17, 2024
  • cpo-qc-site Public

    Website for display of Genomics QC Data for Carbapenemase-Producing Organisms (CPOs)

    Clojure 0 0 0 0 Updated May 17, 2024
View all repositories

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