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ClarityNLP-Lite Python 3.10 upgrade #191
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* Updated conda requirements based on python 3.10 and latest versions possible of packages * Added new Dockerfile to build with mamba, speeding up image creation * Edited subject_finder to remove deprecated spaCy feature and incorporate this change as recommended by spaCy documentation * Updated segmentation.py to change property name as changed in spaCy * Updated tuple_processor.py to correct for change made in pymongo * Updated phenotype_helper.py to correct for change made in import
* Add environmental variable for Mongo settings to use SSL or not with `NLP_MONGO_USE_SSL`
* Adding Richard's changes from clarity_grady
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This PR is for upgrading ClarityNLP-Lite to Python 3.10. It also comes with package version upgrades as well as changes to some code to account for breaking changes in the package upgrade.
Summary of changes: