Skip to content

Issues: YuLab-SMU/ChIPseeker

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

98 Open 86 Closed
98 Open 86 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Mismatch between rownames of tagMatrix and windows indexes
#236 opened May 24, 2024 by lufce
Most distances in the flank_gene_distances column are 0
#235 opened Mar 23, 2024 by rejo27
ctg开头的染色体号和geneChr不一样
#234 opened Mar 18, 2024 by Sherry520
error with Ensembl-based annotation
#233 opened Mar 11, 2024 by yfan18
4 tasks
Would be good to add an error message if the peakfile is not bed file
#232 opened Feb 24, 2024 by pocession
Feature request: flexible distance ranges in plotDistToTSS()
#231 opened Jan 24, 2024 by perinom
A. thaliana annotation mistakes
#230 opened Jan 19, 2024 by BHB26
annotatePeak using multiple cores?
#229 opened Jan 16, 2024 by kelly-sovacool
peakHeatmap split.default error
#228 opened Jan 14, 2024 by thugib
invalid DB file
#225 opened Dec 8, 2023 by hanguojun007
When using enrichPeakOverlap, why the p values of different target peaks are same?
#224 opened Dec 5, 2023 by Dragonlongzhilin
genomicAnnotationPriority ChIPseeker v1.36.0
#223 opened Oct 23, 2023 by HAOXUANmogu
6
A bug or a problem when using ChIPseeker to do genomic annotation ?
#221 opened Jun 20, 2023 by DengEr-1993
How can I get the digital percentages of the gene components of plotAnnoBar?
#220 opened Apr 25, 2023 by danli349
Can it be as highly customizable as "computeMatrix" in deeptools? for example if I want to plot the distribution of genes on the TAD boundary?
#217 opened Mar 7, 2023 by kuangzhuoran
covplot
#215 opened Jan 11, 2023 by ybaeus
Critical errors in annotating introns and exons - wrong gene
#214 opened Dec 28, 2022 by tjparnell
Error in split.default(1:length(windows), as.factor(seqnames(windows))) : group length is 0 but data length > 0 In addition: Warning message: In .merge_two_Seqinfo_objects(x, y) : The 2 combined objects have no sequence levels in common. (Use suppressWarnings() to suppress this warning.)
#213 opened Dec 28, 2022 by xuyiwennn
8 tasks
inconsistency with annotatePeak
#212 opened Nov 29, 2022 by fanying2015
2
Question regard annotatepeaks
#211 opened Nov 29, 2022 by Lattesnow
Wrong annotation (distal intergenic instead of downstream) with annotatePeak
#210 opened Nov 22, 2022 by beryljones
covplot
#208 opened Nov 7, 2022 by fork16
TagMatrixList
#198 opened Sep 21, 2022 by michela12345
1
Feature Request: upset plots for peak overlaps
#195 opened Aug 30, 2022 by apelonero-GladstoneInstitutes
Feature requests about plotPeakProf2 again...
#192 opened May 24, 2022 by yuanlizhanshi
3
ProTip! Type g i on any issue or pull request to go back to the issue listing page.