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Issues list

Add legacy-style-quoting to BioCypher core for use with Neo4j admin-import
#343 opened Apr 24, 2024 by slobentanzer
@nilskre
CI: Python 3.9 not on MacOS latest any more, but 3.12 also fails
#342 opened Apr 24, 2024 by slobentanzer
@nilskre
1
Create full ETL for RDF type output enhancement New feature or request
#341 opened Apr 23, 2024 by LoesvdBiggelaar Improve user-friendliness
[Feature request] Support for long neo4j-admin database import
#335 opened Apr 4, 2024 by JPonsa
3
Relational constraints to SQLLITE output
#334 opened Mar 28, 2024 by dbdimitrov
Refactoring: split up large files into different files within one folder (like write)
#333 opened Mar 21, 2024 by nilskre Software engineering best practices
Refactoring: include neo4j-utils in BioCypher core
#332 opened Mar 21, 2024 by nilskre Software engineering best practices
error occurred when use poetry add biocypher
#331 opened Mar 15, 2024 by willy20040711
1
Add unit tests to template repo
#326 opened Mar 11, 2024 by nilskre Software engineering best practices
@nilskre
RDF parsing leads to none type nodes
#318 opened Mar 1, 2024 by slobentanzer
@nilskre
Neo4j parsing: replace dots with underscores categorically
#312 opened Feb 5, 2024 by nilskre
@nilskre
Resource class and downloader: cache API requests good first issue Good for newcomers
#305 opened Jan 4, 2024 by slobentanzer Improve user-friendliness
create CICD template repo
#304 opened Dec 13, 2023 by nilskre Software engineering best practices
@nilskre
Docs: specify how biocypher treats data paths in Neo4j interaction
#303 opened Dec 9, 2023 by slobentanzer Improve user-friendliness
Add Pandas/Colab tutorial of real-world data (collectri)
#302 opened Dec 9, 2023 by slobentanzer Improve user-friendliness
1
Tasks that can take a while: timed warning mechanism?
#299 opened Dec 1, 2023 by slobentanzer Improve user-friendliness
BioChatter instance to aid in KG creation workflow
#298 opened Dec 1, 2023 by slobentanzer Improve user-friendliness
Why are sometimes preferred ids not rendered in the ouput?
#297 opened Nov 28, 2023 by slobentanzer
Resource download: currently does not allow params (e.g. ?download=1 of Zenodo)
#296 opened Nov 27, 2023 by slobentanzer Improve user-friendliness
BioCypher scalability
#295 opened Nov 24, 2023 by marco-brandizi
1
ICD
#293 opened Nov 13, 2023 by nilskre
@nilskre
LOINC
#292 opened Nov 13, 2023 by nilskre
@nilskre
SNOMED CT
#291 opened Nov 13, 2023 by nilskre
@nilskre
Have a "Docker" tag on the component board
#290 opened Nov 10, 2023 by slobentanzer Improve user-friendliness
Full OmniPath adapter
#287 opened Nov 7, 2023 by slobentanzer
ProTip! Adding no:label will show everything without a label.