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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

Pinned

  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.6k 574

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 942 365

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 961 350

Repositories

Showing 10 of 1241 repositories
  • scp-ingest-pipeline Public

    File Ingest Pipeline for Single Cell Portal

    Jupyter Notebook 2 BSD-3-Clause 0 0 2 Updated May 20, 2024
  • rawls Public

    Rawls service for DSDE

    Scala 24 BSD-3-Clause 3 0 25 Updated May 20, 2024
  • gatk-sv Public

    A structural variation pipeline for short-read sequencing

    Python 159 BSD-3-Clause 70 92 20 Updated May 20, 2024
  • firecloud-orchestration Public
    Scala 30 BSD-3-Clause 4 0 6 Updated May 20, 2024
  • bibt-slack Public

    Broad Institute BITS Blue Team repository for bibt-slack PyPI library.

    Python 0 MIT 0 0 5 Updated May 20, 2024
  • bibt-gcp-storage Public

    Broad Institute BITS Blue Team repository for bibt-gcp-storage PyPI library.

    Python 0 MIT 0 0 6 Updated May 20, 2024
  • bibt-sentinelone Public

    Broad Institute BITS Blue Team repository for bibt-sentinelone PyPI library.

    Python 0 MIT 0 0 5 Updated May 20, 2024
  • bibt-gcp-pubsub Public

    Broad Institute BITS Blue Team repository for bibt-gcp-pubsub PyPI library.

    Python 0 MIT 0 0 6 Updated May 20, 2024
  • bibt-gcp-asset Public

    Broad Institute BITS Blue Team repository for bibt-gcp-asset PyPI library.

    Python 0 MIT 0 0 6 Updated May 20, 2024
  • bibt-gcp-secrets Public

    Broad Institute BITS Blue Team repository for bibt-gcp-secrets PyPI library.

    Python 0 MIT 0 0 6 Updated May 20, 2024
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