Centre for Infectious Disease and One Health
Popular repositories
-
DataHarmonizer
DataHarmonizer PublicA standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …
-
GRDI_AMR_One_Health
GRDI_AMR_One_Health PublicA data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsh…
-
pathogen-genomics-package
pathogen-genomics-package PublicThis is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
Repositories
- pathogen-genomics-package Public
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
- DataHarmonizer Public
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
- GRDI_AMR_One_Health Public
A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
- nf-ncov-voc Public
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
- cidgoh_cloud Public
- Wastewater_Contextual_Data_Specification Public
A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.
- pathogen-mutation-functionalannotation-package Public
Package for functional annotation of mutations