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Issues list

ldpred2.R: add argument to drop SNPs.
#259 opened May 16, 2024 by espenhgn
Subscript out of bound
#258 opened May 7, 2024 by KirakiraZLY
@deepchocolate
3
LDpred2: LD estimation with physical position instead of genetic distance enhancement New feature or request
#257 opened Apr 25, 2024 by deepchocolate
@deepchocolate
singularity: push built container to https://ghcr.io enhancement New feature or request
#256 opened Apr 23, 2024 by espenhgn
@espenhgn
LDpred2: Crash with characters and integers in chromosome column bug Something isn't working
#255 opened Apr 23, 2024 by espenhgn
Allow additional options for gwas.py
#245 opened Mar 18, 2024 by ttfiliz
1
@ttfiliz
improve compatibility w. singularity sandbox mode bug Something isn't working no-issue-activity
#225 opened Feb 7, 2024 by espenhgn
1
misc. improvements enhancement New feature or request
#221 opened Feb 2, 2024 by espenhgn
2 of 6 tasks
@espenhgn @ofrei
@bayramakdeniz @ttfiliz
3
Package LDpred2 scripts no-issue-activity
#218 opened Jan 16, 2024 by deepchocolate
3
Option to get marker, effect allele and beta in the output no-issue-activity
#217 opened Jan 5, 2024 by Mahantesh-Biradar
4
Add PRS-CS deps enhancement New feature or request no-issue-activity
#215 opened Dec 13, 2023 by espenhgn
@espenhgn
1
LDpred2: strategy for per-chromosome resolved PLINK .bed files? enhancement New feature or request no-issue-activity
#210 opened Nov 15, 2023 by espenhgn
3
Fix myst cross-reference warnings. Also fix TOC. documentation Improvements or additions to documentation no-issue-activity
#206 opened Oct 17, 2023 by espenhgn
1
Apptainer rootless builds? enhancement New feature or request no-issue-activity
#201 opened Sep 25, 2023 by espenhgn
1
gwas.py gwas crashes with a KeyError: 0 trying to rename the IID column bug Something isn't working no-issue-activity
#163 opened Apr 28, 2023 by rzetterberg
@ttfiliz
5
LDpred2: Test LDSC regression result no-issue-activity
#154 opened Apr 19, 2023 by deepchocolate
@deepchocolate
1
LDpred2: Add unit test for choice of reference alleles no-issue-activity
#147 opened Mar 6, 2023 by espenhgn
1
Sumstats: Join up chromosome and position no-issue-activity
#137 opened Feb 21, 2023 by deepchocolate
9
LDpred2: LD window, imputation,etc no-issue-activity
#130 opened Feb 10, 2023 by deepchocolate
@deepchocolate
2
Discussion: Apptainer vs. Singularity no-issue-activity
#112 opened Dec 13, 2022 by espenhgn
1
tests/test_saige.py::test_saige_SAIGE() function is missing files bug Something isn't working no-issue-activity
#110 opened Dec 13, 2022 by espenhgn
1
gwas.py: Include BOLT-LMM in pipeline enhancement New feature or request no-issue-activity
#95 opened Nov 22, 2022 by espenhgn
@ttfiliz
1
Include MTAG software no-issue-activity
#92 opened Nov 13, 2022 by ofrei
@ttfiliz
1
set #SBATCH --error/--output flags in gwas.py enhancement New feature or request no-issue-activity
#80 opened Nov 4, 2022 by espenhgn
@espenhgn
1
gwas.sif: Compile GCTB (SBayesR) with MPI bindings. enhancement New feature or request no-issue-activity
#75 opened Oct 25, 2022 by espenhgn
@espenhgn
1
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