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Popular repositories

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 608 356

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 280 69

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 250 70

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 247 146

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 132 84

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 100 17

Repositories

Showing 10 of 167 repositories
  • sciware Public

    Learning materials for scientific software development

    HTML 69 34 2 0 Updated May 23, 2024
  • sciware-command-intro Public

    demo repository for use with Sciware intro to the command line

    C 0 0 0 0 Updated May 23, 2024
  • stan-playground Public

    Run Stan models in the browser

    TypeScript 2 Apache-2.0 0 10 5 Updated May 23, 2024
  • comptools24 Public

    Computational Tools for PDEs with Complicated Geometries and Interfaces workshop materials, June 10-14, 2024.

    TeX 3 Apache-2.0 2 0 0 Updated May 23, 2024
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    Python 0 0 0 0 Updated May 23, 2024
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    Python 31 MIT 4 59 1 Updated May 22, 2024
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    Python 8 Apache-2.0 0 1 0 Updated May 22, 2024
  • flatiron-coffee Public

    Meet your colleagues across the Institute

    Python 4 MIT 4 0 1 Updated May 21, 2024
  • dendro-docs Public

    Documentation for Dendro

    TypeScript 1 0 3 0 Updated May 20, 2024
  • inferelator-velocity Public

    Calculate dynamic (time-dependent) latent parameters from single-cell expression data

    Python 2 MIT 0 0 0 Updated May 20, 2024
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