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GenePattern

A Platform for Reproducible Bioinformatics

27 followers
San Diego, CA
http://genepattern.org/
@genepattern

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genepattern-notebook genepattern-notebook Public

Platform for integrating genomic analysis with Jupyter Notebooks.

Python 44 12
genepattern-server genepattern-server Public

The GenePattern Server web application

HTML 34 18
genepattern-python genepattern-python Public

GenePattern Python Library

Python 12 4

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Showing 10 of 230 repositories

tfsites.IntegrateGenomeAnnotations Public
tfsites.IntegrateGenomeAnnotations finds all possible SNVs and their effects on binding sites.

0 BSD-3-Clause 0 0 0 Updated May 31, 2024
tfsites.AnalyzeGenomeMPRA Public
AnalyzeGWAS

0 BSD-3-Clause 0 0 0 Updated May 31, 2024
tfsites.DifferentialBindingAnalysis Public
tfsites.DifferentialBindingAnalysis.py compares the e-scores between two PBM datasets.

0 BSD-3-Clause 0 0 0 Updated May 31, 2024
tfsites.AffinityScan Public
Step 6 of tfsites workflow, as a GenePattern module

0 BSD-3-Clause 0 0 0 Updated May 31, 2024
tfsites.InSilicoSnvAnalysis Public
Farley Lab UCSD Collaboration

Shell 0 BSD-3-Clause 0 0 0 Updated May 31, 2024
tfsites.AnnotateAndVisualizeTFSites Public
Farley lab collaboration

0 0 0 0 Updated May 31, 2024
genepattern-server Public
The GenePattern Server web application

HTML 34 18 0 4 Updated May 30, 2024
Harmony Public
Wrapper Script for Harmony designed to work with GenePattern Module Integrator

R 0 0 0 0 Updated May 29, 2024
tfsites.DefineTfBindingSitesFromPBM Public
Farley lab UCSD collaboration

0 0 0 0 Updated May 24, 2024
Tangram Public
A method for mapping sc/snRNA-seq data to various forms of spatial data collected from the same region.

Python 1 0 8 0 Updated May 23, 2024

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