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grenaud/README.md

Hello 👋

I am Gabriel. I am an associate professor in the Department of Health Technology at the Technical University of Denmark 🇩🇰. I am mostly interested in Bayesian/maximum-likelihood methods applied to modern and ancient DNA and sequencing in general.

You will find different repositories for various software I have coded with various collaborators. If you have any trouble (bug, installation, weird results), feel free to create an issue. I accept/welcome pull requests 😉.

Popular repositories

  1. deML deML Public

    Maximum likelihood demultiplexing

    C++ 45 12

  2. glactools glactools Public

    command-line tools for the management of genotype likelihoods and allele counts

    C++ 28 2

  3. gargammel gargammel Public

    gargammel is an ancient DNA simulator

    C++ 24 14

  4. leeHom leeHom Public

    Bayesian reconstruction of ancient DNA fragments

    C++ 23 14

  5. schmutzi schmutzi Public

    Maximum a posteriori estimate of contamination for ancient samples

    C++ 20 2

  6. vgan vgan Public

    Suite of tools for pangenomics built using vg

    C++ 16 3