PH-soil-networks-2019

Analyses of plant-herbivore ecological networks from serpentine and non-serpentine soils. Per-species abundance and H' analyses; plant resistance & interaction strength; empirical networks / subsampled and resampled networks / 'null' networks

Data

• 2014-2015_network.csv
• plants.csv
• soil.csv
• plant.traits_RI.csv

Randomization outputs

Resampling / calculating modularity takes a long time to run. These are the outputs from script (5) used in MS. Script (6) describes each file.

• emp_q&q_max.csv
• Q_from.subsampling.csv
• NormalizedQ_from.subsampling.csv

Script name followed by contents

1. Abundance of generalists & specialists across soils.R

   • Figure 2A
   • Table S5

2. H' of generalists across soils.R

   • Figure 2B
   • Figure S3 & S4
   • Table S6 & S7

3. Sampling completeness.R

   • Table S4

4. Bipartite networks.R

   • Figure 3
   • Figure S5

5. Modularity_empirical.rarefied.R

   • Table S8

6. Modularity_figures.R

   • Figure S6

7. Null models.R

   • Figure S7
   • Table S9

8. Plant RI & Generalist IS.R

   • Figure S8
   • Table S10