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16 Open 248 Closed
16 Open 248 Closed
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Issues list

generate_prioritization_tables warnings and documentation enhancement New feature or request
#281 opened May 30, 2024 by csangara
2 tasks
Warning message in predict_ligand_activities enhancement New feature or request
#280 opened May 30, 2024 by csangara
@Eisuan
Condition_colname is not used for subsetting in nichenet_seuratobj_aggregate
#271 opened May 23, 2024 by singlecellfan
2
How should I assign a pathway/pathways to the target genes when running nichenetr?
#267 opened May 7, 2024 by pariaaliour
3
How to choose the best ligand to continue analysis with the potential ligand?
#266 opened May 7, 2024 by pariaaliour
How exactly the ligand activity were calculate?
#260 opened Apr 21, 2024 by iceautumn
1
Identifying bonafide ligand-receptor pairs in the updated ligand-receptor database (V2)
#256 opened Mar 4, 2024 by alecorr
Error while plotting a ligand-receptor interaction network
#252 opened Feb 10, 2024 by Saumya513
Error in "evaluate_target_prediction(setting, ligand_target_matrix, ligands_position) : all genes have same response"
#245 opened Jan 9, 2024 by zcaiwei
there is a warning in this shetp-"score ligand-receptor interactions based on expression strength of the receptor"
#240 opened Nov 9, 2023 by GGboy-Zzz
how to use nichenet in cell development data
#239 opened Nov 7, 2023 by GGboy-Zzz
4
make_ligand_activity_target_exprs_plot inconsistent ordering cell types
#142 opened May 11, 2022 by browaeysrobin
Seurat Wrapper + Circos visualization
#127 opened Feb 17, 2022 by chrismahony
1
Conda package enhancement New feature or request
#95 opened Jul 23, 2021 by Zethson
8
nichenet through seurat-cell type specific ligand/receptor scores enhancement New feature or request
#77 opened Mar 26, 2021 by annamath
4
Making a ligand-receptor-target circos plot enhancement New feature or request
#20 opened Apr 8, 2020 by abberclark
1
ProTip! no:milestone will show everything without a milestone.