Making whole bacterial genome sequencing data analysis easy
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Updated
Mar 13, 2023 - Shell
Making whole bacterial genome sequencing data analysis easy
BSR-Based Allele Calling Algorithm
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
AMR/VF LGT focused bacterial genomics analysis workflow
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
Reproducible and comprehensive sequence analyses for single-species bacterial dataset
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
Script to design core genome phylogeny using bacterial genome assemblies
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
Medium scale identification of genomic neighbors in bacterial genomes
genome assembler for cleaning, mapping and assembling genomes.
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
interpro domain analyzer
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