AMR/VF LGT focused bacterial genomics analysis workflow
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Updated
Jun 8, 2024 - Python
AMR/VF LGT focused bacterial genomics analysis workflow
BSR-Based Allele Calling Algorithm
WGS- Metasociomic- analysing bacterial social interactions in metagenomes of longitudinally collected samples of human microbiomes
genome annotation analyzer for the microbiome analysis
analyzing bacterial genome based ontologies and phylogenomics informativeness
pangenome metagenomics normalizer for gene annotations specifically gene ontologies.
bacterial genome deep learning using keras
genome assembler for cleaning, mapping and assembling genomes.
interpro domain analyzer
interpro to graphs for analyzing domains.
from trinity assembly to deep learning.
R approach to analyze evolutionary phylogenomics
From assemblies to transmission events networks
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
Genomewide Epistasis Analysis on Bacteria
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
An atlas of high-quality Bacillus cereus group genomes with standardized, manually curated metadata
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