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A front-end GUI to map NGS DNA sequencing data using HISAT backend tool. This software offers robust seamless queueing of the mapping operations along with parameter memory for quick and easy customization.
The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https…
A pipeline to map and visualize in vitro acquired CRIPSR spacers from Illumina sequence data. McKitterick, A. C.; LeGault, K. N.; Angermeyer, A.; Alam, M.; Seed, K. D. Competition between mobile genetic elements drives optimization of a phage-encoded CRISPR-Cas system: insights from a natural arms race. Phil. Trans. R. Soc. B 2019, 374, 20180089…
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.