LLM-based ontological extraction tools, including SPIRES
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Updated
Jun 12, 2024 - Jupyter Notebook
LLM-based ontological extraction tools, including SPIRES
National Microbiome Data Collaborative (NMDC) unified data model
Data ingest application for Monarch Initiative knowledge graph using Koza
Linked Open Data Modeling Language
Link Modeling Language (LinkML) model
Python toolkit for SSSOM mapping format
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
SQL and SQLite builds of OWL ontologies
Schema and generated objects for biolink data model and upper ontology
wrapper for multiple linkml storage engines (alpha software)
Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)
Runtime support for linkml generated models
Data transformation framework for LinkML data models
Schema repository for the Alliance of Genome Resources persistent data store
Generated documentation for SAVED data model. Due to the interaction between LinkML, JSON-LD contexts and yet-to-be-generated RDF (turtle/n-triples), this is manually compiled.
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