Survival analysis in Python
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Updated
Mar 7, 2024 - Python
Survival analysis in Python
Image-processing software for cryo-electron microscopy
RAxML Next Generation: faster, easier-to-use and more flexible
CmdStanR: the R interface to CmdStan
Comparative Genomics Toolkit 3
Efficient phylogenomic software by maximum likelihood
Matlab package for learning to specify, compute, and estimate dynamic discrete choice models
Gauss Naive Bayes in Python From Scratch.
Maximum Likelihood estimation and Simulation for Stochastic Differential Equations (Diffusions)
Maximum likelihood demultiplexing
spatialreg: spatial models estimation and testing
A utility library for performing amplitude analysis on particle physics data.
Channel estimations based on RLS, LMS and ML methods.
TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)
Python notebooks for my graduate class on Detection, Estimation, and Learning. Intended for in-class demonstration. Notebooks illustrate a variety of concepts, from hypothesis testing to estimation to image denoising to Kalman filtering. Feel free to use or modify for your instruction or self-study.
Markov-Switching State-Space Models
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
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