BGC Detection and Classification Using Deep Learning
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Updated
Nov 11, 2023 - Jupyter Notebook
BGC Detection and Classification Using Deep Learning
Similarity networks of biosynthetic gene clusters
(Meta-)genome screening for functional and natural product gene sequences
GEne Cluster prediction with COnditional random fields.
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Methods and classes to support Biosynthetic Gene Cluster analysis
The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Case studies of reproducibility in bioinformatics: Metabolomics
An R shinny app for Substructure Search in MIBiG database.
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
💎 Resources of Biosynthetic Gene Clusters related databases and tools.
biosynthetic-gene-clusters toolkit
ALL-BGCs: An Integrated Pipeline for Metagenome Mining for Biosynthetic Gene Clusters
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