BGC Detection and Classification Using Deep Learning
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Updated
Nov 11, 2023 - Jupyter Notebook
BGC Detection and Classification Using Deep Learning
(Meta-)genome screening for functional and natural product gene sequences
GEne Cluster prediction with COnditional random fields.
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
a *biosynformatic* fingerprint to explore natural product distance and diversity
Machine learning meets natural products
NatUKE: Natural Product Knowledge Extraction Benchmark
This repository gathers scripts used for the paper "Open and re-usable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts."
Codes for cheminformatics analysis of the phytochemical space
Data-driven elucidation of flavor chemistry
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Repository for files related to DEREP-NP dereplication database
Feature interrelation profiling using COCONUT and ZINC database
Graph Neural Network predicting the chemical composition of organism across the tree of life.
MFQL files for Natural Products Dereplication
Basic deployment details and issue tracking for the NP Atlas website
Source code and data for "Natural products have increased rates of clinical trial success throughout the drug development process"
Source code and data for "Exploring the known chemical space of the plant kingdom: Insights into taxonomic patterns, knowledge gaps, and bioactive regions"
An R shinny app for Substructure Search in MIBiG database.
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