Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
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Updated
May 21, 2024 - Python
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
A python framework for data mining microbial natural products by integrating genomics and metabolomics data
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
AD & PD cohort variable distributions
Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization
International Physical Activity Questionnaire (IPAQ) variables
Code and sample data for McGregor et al., 2024
Visualizing demographic evolution using geographically inconsistent census data
Miscellaneous codes for spatial mapping and raster data manipulation
Proof-of-concept for storing and querying harmonized AMR Genomic Analysis Results in datahike
Miscellaneous codes for harmonizing agricultural output and other agri-related data raster files and shapefiles. Extracts from raster files the grid-cell data by shapefile boundary.
This is the source code for the Harmony project REST API
NES
Graphics for the article "Methods used in the development of Common Data Models for health data – a Scoping Review"
Blog for NLP data harmonisation project Harmony, open source solution using Python for psychologists
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