Population-scale genomics
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Updated
Jun 3, 2024 - Python
Population-scale genomics
Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI
A modular annotation tool for genomic variants
An R package for detecting copy number variants from SNPs data
set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.
Official code repository for GATK versions 4 and up
Bystro genetic analysis (annotation, filtering, statistics)
National Microbiome Data Collaborative (NMDC) unified data model
Website for Mangul Lab.
GPF: Genotypes and Phenotypes in Families
Read-Only mirror of the One Touch Pipeline; please see GitLab for main repo
Data intensive science for everyone.
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
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