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8 followers · 21 following
  • Data Science Centre, EMBL
  • Heidelberg, Germany
  • 07:29 (UTC +02:00)
  • X @weber8thomas

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Achievement: Pull Sharkx3Achievement: YOLO
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Achievements

Achievement: Pull Sharkx3Achievement: YOLO
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weber8thomas/README.md

Hello, I'm Thomas Weber! 👋

I'm an ARISE fellow hosted in the Data Science Centre of the European Molecular Biology Laboratory (EMBL) in Heidelberg. I have a PhD in bioinformatics and I'm passionate about combining advanced data science workflows and technologies to drive research and innovation.

👨‍💻 Technologies & Interests

  • Bioinformatics Workflows: Snakemake, Nextflow, and Galaxy
  • Containerization & Orchestration: Docker and Kubernetes
  • Data Visualization: Expertise in Plotly Dash for creating interactive data visualizations
  • Home Automation & DIY Tech: Enthusiast of Home Assistant, Zigbee, ESPhome, and 3D printing
  • Self-Hosted Tools: Managing personal server with Plex, Immich, Bitwarden, OctoPi, NPM, Glances, Authentik, ...
  • Exploring New Technologies: Currently diving into no-code tools like n8n, and LLM technologies including LangChain and Ollama

🌟 Highlighted Projects

  • Depictio - My main ongoing project.
  • Mosaicator Pipeline v2 - Recently updated and published the version 2. Structural variant calling from single-cell Strand-seq data using Snakemake.

📫 How to Reach Me

⚡ GitHub Stats

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Pinned

  1. friendsofstrandseq/mosaicatcher-pipeline friendsofstrandseq/mosaicatcher-pipeline Public

    Integrated workflow for SV calling from single-cell Strand-seq data

    Jupyter Notebook 20 9

  2. depictio/depictio depictio/depictio Public

    Bioinformatics web-platform visualisation dashboard creation

    Python