I'm an ARISE fellow hosted in the Data Science Centre of the European Molecular Biology Laboratory (EMBL) in Heidelberg. I have a PhD in bioinformatics and I'm passionate about combining advanced data science workflows and technologies to drive research and innovation.
- Bioinformatics Workflows: Snakemake, Nextflow, and Galaxy
- Containerization & Orchestration: Docker and Kubernetes
- Data Visualization: Expertise in Plotly Dash for creating interactive data visualizations
- Home Automation & DIY Tech: Enthusiast of Home Assistant, Zigbee, ESPhome, and 3D printing
- Self-Hosted Tools: Managing personal server with Plex, Immich, Bitwarden, OctoPi, NPM, Glances, Authentik, ...
- Exploring New Technologies: Currently diving into no-code tools like n8n, and LLM technologies including LangChain and Ollama
- Depictio - My main ongoing project.
- Mosaicator Pipeline v2 - Recently updated and published the version 2. Structural variant calling from single-cell Strand-seq data using Snakemake.
- Twitter: weber8thomas
- LinkedIn: Thomas Weber
- Email: thomas.weber@embl.de
